ComsystanJ (Complex Systems Analysis for ImageJ) is a collection of Fiji/ImageJ2 plugins to compute the complexity, fractal dimension, entropy and other nonlinear measures of images and signals. It is recommended to use it with Fiji. Developed and maintained by Helmut Ahammer.
Downloads
Installation
- Copy the ComsystanJ-x.x.x.jar file to the Fiji’s plugins folder. Alternatively, the jar file can be imported using the Fiji command Plugins/Install.
Project descriptions
- 1D signals - Description of 1D plugins
- 2D images - Description of 2D plugins
- 3D image volume - Description of 3D plugins
Citing ComsystanJ
If you use ComsystanJ plugins and publish your work, please cite following publication:
Helmut Ahammer, Martin A. Reiss, Moritz Hackhofer, Ion Andronache, Marko Radulovic, Fabián Labra-Spröhnle, and Herbert Franz Jelinek. „ComsystanJ: A Collection of Fiji/ImageJ2 Plugins for Nonlinear and Complexity Analysis in 1D, 2D and 3D“. PLOS ONE 18, Nr. 10, 2023, e0292217, https://doi.org/10.1371/journal.pone.0292217
Collaborations
CCMC
CCMC is a multi-agency partnership enabling, supporting, and performing research and development for next-generation space science and space weather models.
It is situated at NASA Goddard Space Flight Center GSFC
CAIMT
The Research Center for Integrated Analysis and Territorial Management aims to develop methods for advanced modeling of the complexity of territorial systems.
IORS
The Institute for Oncology and Radiology of Serbia is a cancer clinic integrated with the National Cancer Research Centre as a research unit.
Noologica
An open source initiative for the design, development, testing, validation and dissemination of a mental health research-diagnostic application.
IASMS
The International Association of Sciences in Medicine and Sports is dedicated to scientific activities in all fields of medicine by maintaining health.
NISOS
Body composition analyses
MUG
Medical University of Graz, Division of Medical Physics & Biophysics
Notes for using ComsystanJ with Fiji
If image plugins do not work, select Edit/Options/ImageJ2…, activate “Use SCIFIO when opening files” and restart Fiji.
It is recommended to use the latest Fiji version from the download archive https://downloads.imagej.net/fiji/archive
Signal plugins do not work with Fiji <=2.9.0.
It is recommended to use both ComsystanJ and Fiji with the same pom-scijava version number.
The pom-scijava version number of ComsystanJ can be viewed directly on the download site Downloads.
To get the pom-scijava version number of your Fiji, simply start Fiji and execute following command in the search bar: !ui.showDialog(app.getApp("Fiji").getPOM().getParentVersion())
Contact
Helmut Ahammer e-mail helmut.ahammer@medunigraz.at